Installation Guide

Follow the steps below to install AltAnalyze3 on your system.

From PyPi

pip install altanalyze3

From GitHub

Clone the GitHub repository:

git clone https://github.com/SalomonisLab/altanalyze3.git

Navigate to the project directory and install:

cd altanalyze3
pip install -e .

Install dependencies:

pip install -r docs/requirements.txt

Verify the installation:

import altanalyze3
print("AltAnalyze3 installed successfully!")

On a Compute-Cluster

proxy_on
python -m venv /path_to_target/altanalyze3
source /path_to_target/altanalyze3/bin/activate
pip install setuptools
cd /path_to_target/altanalyze3
git clone https://github.com/SalomonisLab/altanalyze3.git
module load gcc/12.2.0
pip install -e .
pip list